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Contains 1 Component(s) Includes a Live Web Event on 07/12/2023 at 12:00 PM (EDT)
Dr. Adam Jackson, MBChB, MSc, MRCP, will discuss autosomal recessive ectodermal dysplasia type 14 caused by biallelic variants in TSPEAR. He will discuss a newly described cohort of individuals with ARED14 and outline the main presenting features whilst also exploring the evolutionary origins of several TSPEAR founder variants which may explain their high frequency in present day Europeans.
Dr. Adam Jackson, MBChB, MSc, MRCP, will discuss autosomal recessive ectodermal dysplasia type 14 caused by biallelic variants in TSPEAR. He will discuss a newly described cohort of individuals with ARED14 and outline the main presenting features whilst also exploring the evolutionary origins of several TSPEAR founder variants which may explain their high frequency in present day Europeans.
Overview of Presentation
- Autosomal ectodermal dysplasia type 14 is caused by biallelic deleterious variants in TSPEAR, which encodes a protein of unknown function.
- Hypodontia and conical-shaped teeth are the predominant features of ARED14
- Missense variants perturb the beta propeller formed by several EAR domains in TSPEAR
- Multiple founder variants in TSPEAR, originating at the end of the Last Glacial Maximum, are responsible for ARED14 in non-Finnish Europeans with up to 1 in 140 of these individuals being carriers for ARED14.
- TSPEAR shows restricted expression to ectodermal placodes in keeping with its Drosophila ortholog, Closca, which is well known to coordinate extracellular matrix (ECM)-dependent signalling.
- Knockout of TSPEAR orthologs in zebrafish recapitulates the human dental phenotype whilst also demonstrating a possible role for TSPEAR in WNT signalling in fin regeneration
- TSPEAR’s macromolecular structure makes it a likely candidate for WNT ligand sequestration in the ECM.
Adam Jackson, MBChB, MSc, MRCP
PhD Student
Adam Jackson is an academic clinical fellow in clinical genetics at the Manchester Centre for Genomic Medicine, UK. He obtained his medical degree from the University of Manchester in 2013 prior to starting clinical rotations in both adult and paediatric medicine in the North West of England before obtaining Membership of the Royal Colleges of Physicians (MRCP) in 2018. He obtained a Master’s degree in Genomic Medicine in 2017 and is currently completing his PhD studies on genomics of rare diseases. In March 2023, he was awarded the Robin-Winter prize from the UK Clinical genetics Society.
Siddharth Banka, MBBS, MRCPCH, PhD
Professor
Siddharth Banka is a Professor of Genomic Medicine and Rare Diseases at the University of Manchester, and a Consultant Clinical Geneticist at Saint Mary’s Hospital in Manchester. His research interest is in neurodevelopmental and congenital malformation disorders caused by defects in chromatin remodelling genes, copy number variations and inborn errors of metabolism. His group has led, or contributed to, the discoveries of ~50 novel genetic diseases. Using a combination of cellular and organismal models and benefiting from extensive internal, national and international collaborations his group has defined underlying mechanisms of several rare disorders. His research has a direct and immediate impact on health by improving diagnosis, management and treatments for patients, while simultaneously revealing fundamental biological insights. In his clinical practice I see children and adults with a range of genetic disorders. Overall, the aim of his work is to improve diagnosis, management, and treatments of patients with rare diseases.
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Contains 1 Component(s) Includes a Live Web Event on 06/27/2023 at 12:00 PM (EDT)
Single-cell data provides unprecedented resolution within tissues to observe the gene-expression patterns in tissues, but it also produces mountains of data stored in hundreds of tables. Participants will explore the resources and learn how to filter data along the many dimensions.
Single-cell gene expression analysis is providing information about genetic processes in great detail. It also results in mountains of data. The UCSC Genome Browser displays 14 single-cell data tracks, each a composite of dozens to hundreds of sub-tracks representing the mRNA signal from a single cell type and tissue.The workshop will engage participants in using the single-cell data of the Genome Browser. The single-cell display uses the familiar bar-chart format. The sorting features for the single-cell data (faceting), is new to the Browser and very powerful, but complicated. Users can view data filtered along several dimensions: organ/tissue, cell class and cell type and can sort the data to learn which cells have the highest expression level for a gene.This workshop features exercises in which participants will solve problems relating to the expression of specific genes. E.g., the ELDR gene on chr7 is a noncoding gene about which almost nothing is known: The RefSeq summary is, "Homo sapiens EGFR long non-coding downstream RNA (ELDR), long non-coding RNA."By sorting single-cell data, one discovers that the the top seven cells' ELDR expression levels are all secretory in nature: large intestine goblet cell, saliva-secreting gland basal cell.... This would be suggestive if a candidate variant were under analysis and this matched the phenotype. The workshop will also offer interpretation of transcript-specific gene expression (GTEx) and relate it to single cells.The workshop will offer several such scenarios. We will randomly distribute the tasks among participants. Multiple pairs working on the same task will allow comparison of results, posted in a shared Google spreadsheet. The problem set and spreadsheet of results will be available to participants after the workshop in the event that they are inspired to solve further problems on their own. Questions are encouraged throughout.
Robert Kuhn, PhD
Robert Kuhn Consulting
Robert Kuhn received his PhD in Biochemistry and Molecular Biology from the University of California Santa Barbara. Dr. Kuhn recently retired from the University of California Santa Cruz Genome Browser Project, where he contributed to the growth of the Browser for more than 19 years and established the outreach and training program, presenting more than 300 workshops and trainings in 30 countries. He continues to teach the Genome Browser doing business as Robert Kuhn Consulting.
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- Nonmember - $60
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Contains 1 Component(s) Includes a Live Web Event on 06/21/2023 at 12:00 PM (EDT)
David Higgins will present an overview of the Gabriella Miller Kids First Data Resource and its publicly-funded, free-to-access genomic and clinical datasets for research in pediatric cancer and structural birth defects. Attendees will follow along and be learn how to query the data, build virtual cohorts of participants, apply for access, build an analysis workflow, and analyze the data in an interactive notebook.
The Gabriella Miller Kids First Pediatric Research Program is an NIH Common Fund initiative focused on providing large-scale clinically annotated genomic data for pediatric cancer and structural birth defect cohorts, including tumor- and germline whole genome sequencing (WGS), trio based joint-genotyping, and paired RNA sequencing of somatic tissues. The Gabriella Miller Kids First Data Resource Center (Kids First DRC; https://www.kidsfirstdrc.org) is charged with generating these datasets and empowering collaborative discovery on its data resource platforms. 26 Kids First studies are released on the Kids First Data Resource Portal, representing more than 21,000 participants and more than 1.25 PB of data, with additional datasets being released yearly. At this workshop, we present an overview of the Kids First DRC’s publicly available datasets and platforms, interactive demonstrations for how to use the Kids First Data Resource Portal (https://www.portal.kidsfirstdrc.org) to build a virtual cohort of participants and files for research, and an introduction to analyzing data on CAVATICA, Kids First’s cloud-based analysis platform (https://cavatica.sbgenomics.com). Attendees will follow along on their own devices, using three different methods for searching Kids First DRC’s datasets on the Kids First Data Resource Portal. The Explore Data tool allows users to search for participants of interest based on harmonized clinical phenotypes and diagnoses using the HPO and MONDO ontologies. The File Repository is designed for searching harmonized genomic files associated with these participants, from source alignments to fully processed called variants and gene expression quantification. Finally, Variant Search allows for searching for germline variants present within Kids First datasets. The Kids First Data Resource Portal is integrated with CAVATICA by Seven Bridges for running large-scale bioinformatic workflows such as alignments or variant calling. CAVATICA also supports interactive notebook-based analyses in R Studio and Jupyter Lab, all within their browser window. The session will conclude with information about how to apply for access to these publicly available datasets to help investigators of all types access and analyze genomics-scale pediatrics data as part of their research.
- Children born with structural birth defects are more likely to be diagnosed with cancer before they turn 18, suggesting common underlying genetic causes.
- The publicly-funded Gabriella Miller Kids First Data Resource Center produces curated clinical and genomic datasets with the goal of uncovering new insights into the biology of these conditions.
- The Kids First Data Resource Portal is a free web tool for searching Kids First datasets and building virtual cohorts of participants based on clinical phenotypes, file metadata, or germline variants.
- CAVATICA by Velsera is a cloud-based analysis platform that allows users to build and run large-scale bioinformatic pipelines as well as browser-based interactive analysis for further discoveries.
David Higgins, PhD
Informatics Program Manager
Center of Data-Driven Discovery in Biomedicine (D3b) at the Children's Hospital of Philadelphia (CHOP)
David Higgins, Ph.D., is the Informatics Program Manager for the Center of Data-Driven Discovery in Biomedicine (D3b) at the Children's Hospital of Philadelphia (CHOP). He received his undergraduate education at North Carolina State University before completing graduate training at the University of Georgia in genomics and cytogenetics of the crop plant Zea mays. After several years teaching at the undergraduate level, David brought his expertise in genomics and passion for education to D3b where he serves as a coordinator of training and outreach activities related to the center's collaborative science vision for finding breakthroughs in the causes and treatment of pediatric brain tumors. His role has since expanded to include managing the team responsible for producing high quality clinical and genomic datasets for research into the underlying causes of pediatric cancers and structural birth defects, funded as a part of the Gabriella Miller Kids First Data Resource Center.
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Contains 1 Component(s) Includes a Live Web Event on 06/14/2023 at 12:00 PM (EDT)
Dr. Pineda will discuss patterns of mosaicism discovered through clinical deep sequencing of disease-related genes in one million individuals.
Dr. Pineda will discuss patterns of mosaicism discovered through clinical deep sequencing of disease-related genes in one million individuals.
Overview of Presentation
- Recognize methodology to call mosaic variants.
- Recognize the prevalence of mosaic variants in clinical samples.
- Recognize the clinical implication of a mosaic variant in the context of the type of genetic test, age of the patient, and clinical indication.
Daniel E. Pineda-Alvarez, MD, FACMG
Medical Affairs Director
Invitae
Dr. Pineda is a board-certified clinical molecular geneticist and clinical cytogeneticist with over 10 years of experience in the implementation of genetic testing in the diagnosis and medical management of patients. Dr. Pineda is currently the medical affairs director for hereditary cancer and rare disorders at Invitae. Before joining Invitae in 2017, was the Senior Laboratory Director at Courtagen Life Sciences and Associate Clinical Director of Cytogenomics at GeneDx. Over the years, he has led the implementation of numerous clinical laboratory tests, genomic variant interpretation, and reporting processes. He has been instrumental in developing and launching several genetic diagnostic tests in cytogenetics, oncology, cardiology, mitochondrial, metabolic, endocrine, neurologic, and pediatric disorders. Dr. Pineda obtained his M.D. from Universidad CES in Medellin, Colombia, and later pursued post-doctoral training at the Medical Genetics Branch of the National Human Genome Institute (NHGRI), NIH. Subsequently, he completed his American Board of Medical Genetics and Genomics (ABMGG)-accredited fellowship in clinical molecular genetics and clinical cytogenetics at the NIH Medical Genetics and Genomic Medicine Fellowship Training Program. Daniel participates in several workgroups in medical societies and consortiums, seeking improved access, quality, and consistency of genetic diagnostic tests, and has co-authored several peer-reviewed manuscripts characterizing the natural history and genetics of several hereditary disorders.
Swaroop Aradhya, PhD, FACMG
Head of Medical Affairs
Invitae
Dr. Aradhya is the head of global medical affairs at Invitae in San Francisco. His group conducts research and education aimed at improving the use of genetic testing in healthcare globally. He is an ABMGG board-certified clinical molecular geneticist and cytogeneticist and a fellow of the ACMG. He completed medical genetics training in 2007 at Stanford University and received his Ph.D. in molecular and human genetics in 2001 at Baylor College of Medicine. Dr. Aradhya participated in the international Human Genome Project to sequence the X chromosome, has contributed to characterizing several Mendelian disorders, and helped develop professional guidelines for clinical laboratory genomics. Over the years, he has participated in the NIH ClinGen project, served on various committees of the ASHG, ISPD, and others, and as a Director of the ABMGG.
Bruce Korf, MD, PhD (Moderator)
Editor-in-Chief
American Journal of Human Genetics
Chief Genomics Officer, UAB Medicine
Wayne H. and Sara Crews Finley Endowed Chair in Medical Genetics UAB-
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This ASHG webinar will provide an outline of the different educational and career paths, and steps along those paths, that students at the middle or high school level can begin to pursue now, all with real examples from experts in the field.
How does a person go from completing their first Punnett square in middle or high school to finding the next breakthrough, curating a scientific journal, or counseling patients? There are many careers one can pursue with a focus on human genetics research. The next ASHG webinar will provide an outline of the different educational and career paths, and steps along those paths, that students at the middle or high school level can begin to pursue now, all with real examples from experts in the field.
Learning Objectives
- Guide through human genetics-focused education and career paths for students
- Share steps students can begin to take at this point
- Share career paths of genetics professionals as examples of careers in genetics
- Use these career paths to inspire the next generation to engage in sciences/STEM
To access the webinar recording, you must register for the live event. All registrants must have an ASHG account. Follow the instructions when registering for the live event to create a free account. Email dnaday@ashg.org for any assistance.
Barbara Kraatz Fortini, PhD
Keck Graduate Institute
Barbara Kraatz Fortini, PhD, is Associate Professor of Genetics and Director of the Center for Training in Applied Genomics (CTAG) at the Keck Graduate Institute in Claremont, CA. She serves as Program Director for the MS in Human Genetics and Genomic Data Analytics and for the Clinical Genetics and Bioinformatics summer program for undergraduates. Dr. Fortini received her PhD from the California Institute of Technology and completed her postdoctoral training at the Keck School of Medicine of USC in the Department of Preventive Medicine at the USC Norris Comprehensive Cancer Center. Her current research program focuses on the functional genomics of colorectal cancer risk.
Robin Williamson, PhD
Gates Chili Middle School
Dr. Williamson graduated from the University of Rochester (UR) with a major in biochemistry and minors in chemistry and American Sign Language in 1998. She then earned her PhD in genetics from Harvard University in 2005. She served as Deputy Editor of the American Journal of Human Genetics from 2005 to 2011. She then worked as a subject matter expert and project manager for the consultant firm Booz Allen Hamilton and supported clients who funded military health research. In 2014 Dr. Williamson worked for a personalized cancer genetics company, and in 2016 she returned to UR where she was a research project manager for a lab working towards developing stem cell derivatives to treat multiple sclerosis. In 2018 she earned her Master's in secondary science education at the Warner School of Education, and she now teaches 7th grade science at Gates Chili Middle School near Rochester, NY.
Sara C. Zapico, PhD
Department of Chemistry and Environmental Sciences
New Jersey Institute of Technology
Sara C. Zapico is an assistant professor in the Department of Chemistry and Environmental Sciences at New Jersey Institute of Technology. She is also a research collaborator at the Smithsonian Institution. She received her PhD in biochemistry, with a focus in biomedical sciences, from the University of Oviedo in Spain, and her Master's in forensic Anthropology and Genetics from the University of Granada, in Spain. After that, she was a postdoctoral fellow at Smithsonian Institution and an associate at the forensic unit from the International Committee of the Red Cross in Geneva, Switzerland, completing her postdoctoral training with other visiting scientist positions. Her research interests focus on the application of biochemical techniques to forensic science issues, like age-at-death estimation and the determination of post-mortem interval, with implications in aging and biomedical research.
Kenneth Ramos, MD, PhD (Moderator)
Professor of Translational Medical Sciences Alkek Chair of Medical Genetics Executive Director
Institute of Biosciences and Technology Associate Vice President for Research Assistant Vice Chancellor for Health Services, Texas A&M University System
Kenneth S. Ramos, MD, PhD is an accomplished physician-scientist with designations in the National Academy of Medicine and National Academy of Sciences. He is a transformational leader recognized throughout the world for his scientific contributions in the areas of genomics, precision medicine and toxicology.
With formal training in pharmaceutical sciences, chemistry, biochemistry, pharmacology, and medicine, Dr. Ramos is helping to steer the changing landscape of medicine, biotechnology and healthcare. In this context, he leads several translational, clinical research, and educational programs that integrate diverse approaches to elucidate genomic mechanisms of disease and to develop novel therapies for several oncologic, pulmonary, and vascular diseases.
Dr. Ramos has provided academic, executive, administrative, and scientific leadership in the areas of genetics and genomic medicine and toxicology at various academic institutions and over the course of his career has positively influenced the career of numerous clinicians and scientists engaged in medical, veterinary and pharmaceutical practice. He is deeply committed to initiatives that advance modern technological applications to improve quality of healthcare and reduce disease burden and health-associated costs.
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Sponsored by Vibrent Health
Genomics-based medicine and care become even more powerful when combined with clinical and phenotypic data sets. To achieve this, research programs must aim to engage patients in their research to consent and perform data collection. Without patients consenting to data collection and sharing, research programs stand still.
Join this session if you’re part of a research team aiming to expand a genomics medicine program, engage individuals in precision health research, increase cohort diversity, or improve an existing patient experience.
The discussion will explore how digital methods are in use by both small and large-scale research programs to eConsent patients, gather biospecimens and phenotypic data, and communicate with patients effectively. Our presenters will draw from the real-world evidence from the SuperAgers Family Study, Mount Sinai Million Discoveries Project, the NIH All of Us Research Program, and other studies to illustrate what all human cohort studies can learn and adopt to increase diversity, size, and scientific value of research cohorts.
- Explore best practices from the most successful research programs for patient engagement
- Understand how to overcome the challenges with eConsent, and multi-modal consent
- Discover how digital methods can improve phenotypic, clinical, and genomic data collection
*By registering for and attending this session, you consent to share your contact information with the sponsor of this session. Please view the disclaimer tab for more information.
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Ruizhi "Vince" Duan, MS, will discuss using family-based genomics and rare variant analyses to explore the developmental genomics of congenital limb malformations. Their investigation highlighted that allelic series and dosage effects contribute to the observed clinical variability.
Ruizhi "Vince" Duan, MS, will discuss using family-based genomics and rare variant analyses to explore the developmental genomics of congenital limb malformations. Their investigation highlighted that allelic series and dosage effects contribute to the observed clinical variability.
Overview of Presentation:
- Novel variant identification facilitates the discovery of an allelic series.
- WNT10B dysfunction in an isolated split-hand/foot malformation
- A proposed allele-specific gene dosage model for perturbation of BHLHA9 action
- Evidence of founder alleles in multiple limb malformation phenotypes
Read the full paper here: Developmental genomics of limb malformations: Allelic series in association with gene dosage effects contribute to the clinical variability
Ruizhi "Vince" Duan, MS
PhD Candidate at Lupski Lab
Baylor College of Medicine
Ruizhi "Vince" Duan is a Ph.D. candidate in the Lupski lab at Baylor College of Medicine and a BCM-GREGoR Rare Disease Research Center trainee member. He received his M.S. in Diagnostic Genetics from the School of Health Professions at MD Anderson Cancer Center and was a certified cytogenetic technologist. His doctoral research explores the genetic etiologies of human developmental malformations and rare Mendelian diseases via large-scale family-based multimodal genome analyses. His publications mainly focus on uncovering novel disease-causing variants and mutational mechanisms in rare diseases.
Mike Bamshad, MD (Moderator)
Editor-in-Chief of HGG Advances
Chief of the Genetic Medicine Division of the Department of Pediatrics at Seattle Children’s Hospital, University of Washington (UW), Director of the Center for Clinical Genomics, Principal investigator the UW Center for Mendelian Genomics
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Olivia Lee, BS, and Mitchell Machiela, ScD, MPH, will discuss their long-read sequencing investigation of the 6p25.1 Ewing sarcoma susceptibility locus. Their investigation identified that longer variants in a GGAA microsatellite are associated with increased Ewing sarcoma risk by promoting EWSR1-FLI1 binding and altering transcription of nearby RREB1.
Olivia Lee, BS, and Mitchell Machiela, ScD, MPH, will discuss their long-read sequencing investigation of the 6p25.1 Ewing sarcoma susceptibility locus. Their investigation identified that longer variants in a GGAA microsatellite are associated with increased Ewing sarcoma risk by promoting EWSR1-FLI1 binding and altering transcription of nearby RREB1.
Overview of Presentation
• Germline variation at 6p25.1 leads to increased Ewing sarcoma susceptibility
• The 6p25.1 susceptibility locus includes a GGAA microsatellite that is bound by EWSR1-FLI1, a frequent translocation occurring in Ewing sarcoma cases
• Longer alleles of the GGAA microsatellite generally promote better EWSR1-FLI1 binding and were associated with increased Ewing sarcoma risk.
• Functional investigation of the GGAA microsatellite implicate de novo enhancer activity that alters RREB1 expression.
Olivia Lee, BS
Predoctoral Fellow in the Integrative Tumor Epidemiology Branch, Division of Cancer Epidemiology and Genetics
National Cancer Institute
Ms. Olivia Lee, B.S., is an NIH Graduate Partnership Program (GPP) fellow at the NCI Division of Cancer Epidemiology and Genetics and is currently completing her doctoral degree in quantitative sciences and cancer biology at the University of Texas MD Anderson Cancer Center. Her doctoral research focuses on investigating the interaction between somatic mutations and germline variants in Ewing Sarcoma and profiling the genomic landscape of thyroid cancer metastasis following the Chornobyl accident and 22q loss in papillary thyroid carcinoma.
Mitchell Machiela, ScD, MPH
Earl Stadtman Investigator in the Integrative Tumor Epidemiology Branch, Division of Cancer Epidemiology and Genetics
National Cancer Institute
Dr. Mitchell Machiela received his M.P.H. in epidemiology from the University of Michigan and his Sc.D. in epidemiology from the Harvard T.H. Chan School of Public Health. In 2017, Dr. Machiela was appointed as Earl Stadtman Investigator in the Integrative Tumor Epidemiology Branch. His research program is focused on understanding the role of inherited variation and acquired mutations in cancer risk. His large-scale investigations of mosaic chromosomal alterations have led to improved knowledge of the risk factors and outcomes associated with this type of clonal hematopoiesis. He also conducts genetic association studies to uncover the underlying genetic architecture of cancer (e.g., Ewing sarcoma). Dr. Machiela has received numerous awards and honors for his research, including being selected as a Forbeck Scholar and receiving an NCI Directors Award and Outstanding Mentor Award.
Bruce Korf, MD, PhD (Moderator)
Editor-in-Chief
American Journal of Human Genetics
Chief Genomics Officer, UAB Medicine
Wayne H. and Sara Crews Finley Endowed Chair in Medical Genetics UAB-
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This webinar, the third in a series, will explore high-level approaches to managing work life balance and caregiving of children, elders, and personal relations, with talks from ASHG member experts and a certified coach/facilitator in the area of professional and career development.
This webinar, the third in a series, will explore high-level approaches to managing work life balance and caregiving of children, elders, and personal relations, with talks from ASHG member experts and a certified coach/facilitator in the area of professional and career development.
In this webinar, attendees will learn about:
- Experience navigating work-life balance while starting a family
- Balancing home family life while starting a lab
- Leveraging creativity to reach family and personal goals as a woman in science
- Improving work-life balance by building personal and professional networks
- Caring for elderly parents and how to manage sickness/life altering illnesses for a parent while going through a job transition
This webinar series is available to current ASHG members only. Please join or renew your membership today to register for the event.
Beryl Cummings, PhD
Senior Associate
Third Rock Ventures
Beryl Cummings completed her PhD in human genetics at Harvard Medical School and the Broad Institute, where she was part of the Genome Aggregation Database (gnomAD) team. After her training, Beryl was an early hire into the human genetics team at Maze Therapeutics. She is currently a Senior Associate at Third Rock Ventures, working on building new biotech companies. She is motivated by continually learning the best ways to leverage human genetics in drug discovery and is passionate about bringing new therapies to rare disease families.
Jay Shendure, MD, PhD
Principal Investigator, Shendure Lab
Department of Genome Sciences, University of Washington
Jay Shendure is an Investigator of the Howard Hughes Medical Institute, Professor of Genome Sciences at the University of Washington, Director of the Allen Discovery Center for Cell Lineage Tracing, and Scientific Director of the Brotman Baty Institute for Precision Medicine. His 2005 doctoral thesis with George Church included one of the first successful reductions to practice of next generation DNA sequencing. Dr. Shendure's research group in Seattle pioneered exome sequencing and its earliest applications to gene discovery for Mendelian disorders and autism; cell-free DNA diagnostics for cancer and reproductive medicine; massively parallel reporter assays, saturation genome editing; whole organism lineage tracing, and massively parallel molecular profiling of single cells. Dr. Shendure is the recipient of the Curt Stern Award from the American Society of Human Genetics (2012), the Richard Lounsbery Award from the National Academy of Sciences (2019) and the Mendel Award from the European Society of Human Genetics (2022) and is an elected member of the American Association for the Advancement of Science (AAAS) and the National Academy of Sciences (NAS). He serves or has previously served as an advisor to the NIH Director, the US Precision Medicine Initiative, the National Human Genome Research Institute, the Chan-Zuckerberg Initiative and the Allen Institutes for Cell Science and Immunology. He received his MD and PhD degrees from Harvard Medical School in 2007.
Mary Canady, PhD
Founder and President
Biotech Networks
Mary Canady has a Ph.D. in biochemistry from University of California, Riverside and is the founder of Biotech Networks, the leading resource for more than 50 thousand life scientists to connect, learn, and grow, with hubs across the US.
Dr. Canady has led marketing and communications teams to meet business objectives at large global life science companies as well as at biotech startups.
Mary is also a leader in advancing science communication, advocacy, and diversity and has led organizations and teams to further her life’s mission to empower every scientist to make a bigger impact.
Honey V. Reddi, PhD, FACMG (Moderator)
Chief, Division of Precision Medicine and Cytogenetics; Director, Precision Medicine Laboratory
The Department of Pathology at the Medical College of Wisconsin
Dr. Reddi is a Professor and Chief for the Division of Precision Medicine and Cytogenetics and Director of the Precision Medicine Laboratory in the Department of Pathology at the Medical College of Wisconsin (MCW). Dr. Reddi has a doctoral degree in biotechnology and trained in Clinical Molecular Genetics at the Mayo Clinic in Rochester, Minnesota, where she also led a translational research program focused on thyroid cancer. In 2018 Dr. Reddi received the prestigious “Women of Innovation Award” in the Category of Large Business Innovation and Leadership from the Connecticut Technology Council, which recognizes extraordinary creativity and leadership in bioscience and technology. Her research interests include cancer biology, viro-therapeutics and the genetics of somatic and inherited disorders. Dr. Reddi is passionate about impacting patient-care through innovation and translation and is known for inspiring women in Biomedical sciences through her leadership ethic.
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Dr. Kerstin U. Ludwig will present on their identification of risk variants for non-syndromic cleft lip with/without cleft palate, using whole-genome sequence data. She will specifically discuss different strategies that were applied to analyze those de novo sequence variation located within the non-coding parts of the genome.
Dr. Kerstin U. Ludwig will present on their identification of risk variants for non-syndromic cleft lip with/without cleft palate, using whole-genome sequence data. She will specifically discuss different strategies that were applied to analyze those de novo sequence variation located within the non-coding parts of the genome.
Overview of Presentation- Orofacial clefting is a common and highly heritable phenotype.
- Whole-genome-sequencing data from parents and affected children enables identification of de novo sequence variation also in non-coding regions, but implicating those variants in disease etiology is challenging.
- Across the non-coding genome, the “search space” for causal de novo mutations (DNM) can be reduced by intersecting genomic positions of DNMs with genetic regions that have been shown with functional relevance to facial development.
- Also, sequence features around DNMs can be integrated with transcription factor binding sequences / motifs, to predict potential changes in presence and/or strength of binding effects.
Kerstin Ludwig, PhD
Group Leader and Principal Investigator
Institute of Human Genetics, University of Bonn, Germany
Dr. Kerstin U. Ludwig is a Principal Investigator and Group Leader at the Institute of Human Genetics at the University of Bonn, Germany. She obtained her undergraduate training at the Universities of Dresden (Germany), Strasbourg (France) and Toronto (Canada). In her PhD studies at the University of Bonn, she worked on the genetics of psychiatric disorders before turning towards studying the genetic etiology of orofacial clefting. As part of this work she has contributed to the discovery of several risk loci for nonsyndromic cleft lip w/wo cleft palate and the identification of subtype-specific effects of risk variants. Since 2020 Kerstin Ludwig has been engaged in international efforts to study the host genetics of COVID-19, as part of which she is leading the German contributions. She has received numerous awards for her research, including admissions to the Emmy-Noether program of the German Research Council and the “Junges Kolleg” of the NRW Academy of Arts and Sciences, and the Marylou Buyse Award for Excellence in Craniofacial Research in 2020.
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