Workshop: The Michigan Imputation Server: Data Preparation, Genotype Imputation, and Data Analysis

  • Register
    • Regular Member - Free!
    • Early Career Member - Free!
    • Resident/Clinical Fellow Member - Free!
    • Postdoctoral Fellow Member - Free!
    • Graduate Student Member - Free!
    • Undergraduate Student Member - Free!
    • Emeritus Member - Free!
    • Life Member - Free!
    • Trainee Member - Free!

    Continue

This interactive workshop is intended for anyone interested in learning how to impute genotypes and to use the imputed genotypes, with a special focus on up-coming reference panels, including the multi-ancestry panel from the TOPMed program.

For more information, visit our Online Program Planner.

Learning Objectives:

  1. Formulate genotype data for imputation.
  2. Apply the imputation server with the available parameters, appropriate reference panel, and messages.
  3. Judge quality control on imputed genotypes and imputation quality metrics.
  4. Construct a GWAS analysis using imputed genotypes.

Key:

Complete
Failed
Available
Locked
Part One: Imputation and the Server
Part One: Imputation and the Server
Open to view video.
Open to view video.
You must register to access.
Part One: Imputation and the Server
Open to download resource.
Open to download resource.
You must register to access.
Part Two: Run a Job, Quality Control, and Data Preparation
Part Two: Run a Job, Quality Control, and Data Preparation
Open to view video.
Open to view video.
You must register to access.
Part Two: Run a Job, Quality Control, and Data Preparation
Open to download resource.
Open to download resource.
You must register to access.
Part Three: Tracking Runs and Downloading Data
Part Three: Tracking Runs and Downloading Data
Open to view video.
Open to view video.
You must register to access.
Part Three: Tracking Runs and Downloading Data
Open to download resource.
Open to download resource.
You must register to access.
Part Four: Performing GWAS Using Imputated Data
Part Four: Performing GWAS Using Imputated Data
Open to view video.
Open to view video.
You must register to access.
Part Four: Performing GWAS Using Imputated Data
Open to download resource.
Open to download resource.
You must register to access.
Part Five: Imputation Bot
Part Five: Imputation Bot
Open to view video.
Open to view video.
You must register to access.
Part Five: Imputation Bot
Open to download resource.
Open to download resource.
You must register to access.
Part Six: The TOPMed Imputation Server
Part Six: The TOPMed Imputation Server
Open to view video.
Open to view video.
You must register to access.
Part Six: The TOPMed Imputation Server
Open to download resource.
Open to download resource.
You must register to access.
Part Seven: Imputation Panels
Part Seven: Imputation Panels
Open to view video.
Open to view video.
You must register to access.
Part Seven: Imputation Panels
Open to download resource.
Open to download resource.
You must register to access.