Workshop: The Michigan Imputation Server: Data Preparation, Genotype Imputation, and Data Analysis

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This interactive workshop is intended for anyone interested in learning how to impute genotypes and to use the imputed genotypes, with a special focus on up-coming reference panels, including the multi-ancestry panel from the TOPMed program.

For more information, visit our Online Program Planner.

Learning Objectives:

  1. Formulate genotype data for imputation.
  2. Apply the imputation server with the available parameters, appropriate reference panel, and messages.
  3. Judge quality control on imputed genotypes and imputation quality metrics.
  4. Construct a GWAS analysis using imputed genotypes.

Key:

Complete
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Part One: Imputation and the Server
Part One: Imputation and the Server
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Open to view video.
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Part One: Imputation and the Server
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Part Two: Run a Job, Quality Control, and Data Preparation
Part Two: Run a Job, Quality Control, and Data Preparation
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Part Two: Run a Job, Quality Control, and Data Preparation
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Part Three: Tracking Runs and Downloading Data
Part Three: Tracking Runs and Downloading Data
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Part Three: Tracking Runs and Downloading Data
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Part Four: Performing GWAS Using Imputated Data
Part Four: Performing GWAS Using Imputated Data
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Part Four: Performing GWAS Using Imputated Data
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Part Five: Imputation Bot
Part Five: Imputation Bot
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Part Five: Imputation Bot
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Part Six: The TOPMed Imputation Server
Part Six: The TOPMed Imputation Server
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Part Six: The TOPMed Imputation Server
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Part Seven: Imputation Panels
Part Seven: Imputation Panels
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Part Seven: Imputation Panels
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