The Michigan Imputation Server: Data Preparation, Genotype Imputation, and Data Analysis

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This interactive workshop is intended for anyone interested in learning how to impute genotypes and to use the imputed genotypes, with a special focus on up-coming reference panels, including the multi-ancestry panel from the TOPMed program.

For more information, visit our Online Program Planner.

Learning Objectives:

  1. Formulate genotype data for imputation.
  2. Apply the imputation server with the available parameters, appropriate reference panel, and messages.
  3. Judge quality control on imputed genotypes and imputation quality metrics.
  4. Construct a GWAS analysis using imputed genotypes.

Key:

Complete
Failed
Available
Locked
Part One: Imputation and the Server
Part One: Imputation and the Server
Open to view video.
Open to view video.
Part One: Imputation and the Server
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Open to download resource.
Part Two: Run a Job, Quality Control, and Data Preparation
Part Two: Run a Job, Quality Control, and Data Preparation
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Open to view video.
Part Two: Run a Job, Quality Control, and Data Preparation
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Open to download resource.
Part Three: Tracking Runs and Downloading Data
Part Three: Tracking Runs and Downloading Data
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Open to view video.
Part Three: Tracking Runs and Downloading Data
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Open to download resource.
Part Four: Performing GWAS Using Imputated Data
Part Four: Performing GWAS Using Imputated Data
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Open to view video.
Part Four: Performing GWAS Using Imputated Data
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Open to download resource.
Part Five: Imputation Bot
Part Five: Imputation Bot
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Open to view video.
Part Five: Imputation Bot
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Open to download resource.
Part Six: The TOPMed Imputation Server
Part Six: The TOPMed Imputation Server
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Open to view video.
Part Six: The TOPMed Imputation Server
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Open to download resource.
Part Seven: Imputation Panels
Part Seven: Imputation Panels
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Open to view video.
Part Seven: Imputation Panels
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Open to download resource.